Biology

 
NOTE: See the beginning of Section F for abbreviations, course numbers and coding.

BIOL1017Applications in Biology2 ch (3L)

Instruction and laboratory work dealing with the applications of Biology at the level of biological molecules, the cell and organisms.

Prerequisite: BIOL 1105 with a minimum grade of C. 

Pre- or co-requisite: BIOL 1205.

BIOL1105Biological Principles, Part I3 ch (3C 1.5T)

Ecology and evolution of selected plants, animals, and additional organisms. Topics include ecosystems and ecological interactions, and adaptations in the context of the organisms' environment. NOTE: Students intending to major in Biology must take BIOL 1017 and BIOL 1205. Credit can be obtained for only one of BIOL 1012 or 1105.

BIOL1202Introduction to Marine Science3 ch (3C)

An introduction to the physical, chemical, and biological aspects of marine environments. Marine management issues and laws will be discussed.

BIOL1205Biological Principles, Part II3 ch (3C)

Considers the chemistry of life, maintenance of cells and organisms, energy utilization, genetic information, reproductive continuity and mechanisms of evolution. This course is designed for science students or other students planning to major in Biology. 

Prerequisite: BIOL 1105 with a minimum grade of C.

BIOL1302Introduction to Environmental Biology3 ch (3C)

Introduction to issues in environmental biology, including ecosystem health, sustainable development, environmental law, multi-stakeholder decision-making, etc. The course will use a case study method to examine local and global effects of human activity on the earth’s ecology and human society, focusing on environmental concerns of coastal regions.

BIOL1411Anatomy & Physiology I3 ch (3C)

Basic concepts in human anatomy and physiology, with an emphasis on the normal condition. NOTE: Students cannot get credit for both BIOL 1411 and BIOL 1441. Nursing students cannot get credit for BIOL 1411.

Prerequisites: High school grade 12 chemistry and biology.

BIOL1412Anatomy & Physiology II3 ch (3C)

A continuation of BIOL 1411, basic concepts in human anatomy and physiology, with an emphasis on the normal condition. NOTE: Students cannot get credit for both BIOL 1412 and BIOL 1442. Nursing students will not get credit for BIOL 1412. 

Prerequisite: BIOL 1411 or BIOL 1441.

BIOL1441Human Anatomy and Physiology I4 ch (3C 3L*)

Basic concepts in human anatomy and physiology with an emphasis on the normal condition. This course includes a selection of appropriate laboratory exercises. For Nursing students only. NOTE: Students cannot get credit for both BIOL 1411 and BIOL 1441.

Prerequisites: High school grade 12 chemistry and biology. 

BIOL1442Human Anatomy and Physiology II4 ch (3C 3L*)

Continuation of BIOL 1441 , basic concepts in human anatomy and physiology with an emphasis on the normal condition. This course includes a selection of appropriate laboratory exercises. For Nursing students only. NOTE: Students cannot get credit for both BIOL 1412 and BIOL 1442.

Prerequisite: BIOL 1441

BIOL2015Introductory Genetics4 ch (3C 3L*) (EL) (W)

History of genetics, Mendelian genetics, chromosome theory of inheritance, sex determination and linkage, extensions of Mendelian analysis, genetic linkage, crossing-over, genetic mapping, extranuclear genetics, quantitative and population genetics.

Prerequisites: BIOL 1017BIOL 1105 and BIOL 1205.

BIOL2065Introductory Biochemistry (Cross-Listed: CHEM 2065)4 ch (3C 3L*) (W)

Protein structure and function, techniques for protein analysis, examples of important proteins, mechanisms and regulations of enzymatic activity, metabolism (basic concepts and design, followed by the study of a few pathways). 

Prerequisites: BIOL 1017, BIOL 1105BIOL 1205 and CHEM 2421.

BIOL2125Introductory Botany5 ch (3C 3L)

Introduces botanical principles and processes. Includes basic anatomy and morphology on a range of scales: cellular structure and processes, tissues, organs, and their functions.

Prerequisites: BIOL 1017 and BIOL 1105 and BIOL 1205.

BIOL2135Introductory Botany for Non-Biologists3 ch (3C)

Introduces botanical principles and processes. Includes basic anatomy and morphology on a range of scales: cellular structure and processes, tissues, organs and their functions. Students are required to attend weekly laboratory/tutorial sessions, but will not write laboratory exams or assignments. This course is not equivalent to BIOL 2125 for credit toward a BSc, but serves as an acceptable prerequisite for BIOL 3275, BIOL 3353, BIOL 3355 or BIOL 3541 in place of BIOL 2125. Credit will not be granted for both BIOL 2125 and BIOL 2135

Prerequisites: BIOL 1205 or Grade 12 Biology with 80% or higher and permission of the instructor. 

BIOL2245Introductory Molecular Cell Biology4 ch (3C 3L*)

Studies cellular structure , DNA synthesis and repair, RNA synthesis, protein synthesis, gene regulation, cancer, immune response, and molecular techniques.

Prerequisites: BIOL 1017 and BIOL 1105 and BIOL 1205.

BIOL2385Fundamentals of Microbiology3 ch (3C)

Introduction to the fundamental concepts of infectious disease microbiology. Discusses bacteria, fungi, viruses, protozoa, helminths and arthropods. Credit can only be obtained for one of BIOL 2485, BIOL 3251, BIOL 2385.

Prerequisites: BIOL 1017 and BIOL 1105 and BIOL 1205.

BIOL2485Introduction to Microbiology 4 ch (3C 3L*)

This course will cover the major groups of microbes, with a focus on microbes involved in human health and disease. Bacteria, fungi, viruses, protozoa, helminths and arthropods will be discussed with emphasis on microbial metabolism, growth, structure and function; roles in medicine and industry; microbial interactions; microbial control measures; microbial diseases; and immunological responses to infection. Laboratories will stress aseptic techniques for cultivation, staining, and characterization of bacteria and experimental concepts of the discipline. 

Prerequisites: BIOL 1017BIOL 1105 and BIOL 1205.

BIOL2585Introductory Ecology4 ch (3C 4L*) (W)

Introduces concepts of ecology common to terrestrial, fresh water and marine ecosystems. Provides a basis for further ecological or environmental studies. Introduces man’s influence on ecosystems. 

PrerequisitesBIOL 1017 and BIOL 1105.

BIOL2615Introductory Zoology5 ch (3C 3L)

Classification, functional morphology, development and evolution of the major animal groups.

Prerequisites: BIOL 1017 and BIOL 1105 and BIOL 1205; all with a grade of "C" or better.      
BIOL2831Pathophysiology 3 ch (3C)

A review of the normal physiological mechanisms for maintaining homeostasis. This is followed by a consideration of how various perturbations (such as environmental or lifestyle factors) and disease can disrupt the normal balance and lead to pathology. For Nursing students only, or by permission of the instructor.

Prerequisites: BIOL 1441 and BIOL 1442.

BIOL2852Pathophysiology II3 ch (3C)

A continuation of BIOL 2831.

Prerequisite: BIOL 2831. For Nursing students only.

BIOL3015Wildlife Ecotourism3 ch (3C/WEB)

This course will introduce students to the history, concepts, principles, planning and management of wildlife tourism enterprises and how research is conducted to determine if these activities have a negative impact on the behaviour and/or physiology of the wildlife involved.

Prerequisite: 60 ch completed.
BIOL3022Evolution3 ch (3C)

Traces the development of a body of theory explaining biological unity and diversity, from pre-Darwinian ideas to current issues in evolutionary biology. The course integrates theoretical, descriptive, and empirical studies to elucidate the patterns and processes of evolution (what evolution is, and how it occurs), and to explore the experimental and analytical methods biologists use to study evolution.

Prerequisite: BIOL 2015 or BIOL 2245, or permission of instructor.

BIOL3055Animal Physiology I (A)4 ch (3C 3L*)

A physiological approach to organismic function in animals, focusing on homeostasis and nervous, muscular, and cardiovascular systems.

Prerequisite: BIOL 2615.

BIOL3065Ecological Decision-Making 4 ch (3C 1.5L) (EL) (W)
This course introduces the discipline of decision science, which is an interdisciplinary field that uses quantitative data from various sources to make the best decisions. The course applies this tecnique to a coastal management and planning context. It will include biological, economic, political, and cultural aspects of coastal management.

Prerequisite: BIOL 2585
BIOL3101Molecular and Cellular Basis of Cancer (Cross-Listed: HEAL 3101)3 ch (3C)
Cancer is a common disease that affects a multitude of families and health practitioners globally every day. Using cancer as a model, students will examine the molecular and cellular approach to the study of disease. Students will have the chance to explore cancer epidemiology, etiology, pathogenesis, diagnosis, and treatment from a biomedical perspective. This course will enrich students' education through an examination of the various applied methods to studying, diagnosing, and treating illness.

Prerequisites: Two of the following: BIOL 2015, BIOL 2065, BIOL 2245, BIOL 2485, or permission of the instructor.
BIOL3132Advanced Biochemistry3 ch (3C) (EL)

Emphasizes the molecular underpinnings of the healthy and diseased states by extending and integrating essential molecular concepts introduced in Introductory Biochemistry, BIOL 2065.

Prerequisite: BIOL 2065.

BIOL3140Independent Studies3 ch (3WS) (EL) (W)

Gives academically strong Biology Majors an opportunity to write a research report or perform a research project on a subject of interest. The student must discuss the topic with an instructor best qualified to give approval in the subject area and who is able to give guidance during the year.

 Prerequisite: Completion of 60 ch and permission of instructor.

BIOL3165Marine Ecology (A)4 ch (3C 3L*)

An introduction to the interrelationships between organism and environment in marine ecosystems. Limited enrolment: preference will be given to Applied Coastal Ecology Majors and Marine Biology Majors, then other students based on CGPA.

Prerequisite: BIOL 2585.

BIOL3216Ecophysiology, Biochemistry, and Aquaculture of Seaweeds4 ch (3C 3L*)
Brief description of the general characteristics of seaweeds: diversity, classification/systematics and evolution. Ecology, physiology, and biochemistry of seaweeds: their environment and zonation; major physical and chemical parameters; biological parameters; human parameters. Aquaculture and uses of seaweeds in highly diversified industries, world market and trends.


Prerequisite:
BIOL 2125.

BIOL3245Environmental Chemistry (A) (Cross-Listed: CHEM 3245)4 ch (3C 3L)

Course will provide students with a chemical basis for understanding the natural environment and current environmental issues. Topics will include: the composition of the natural environment, the chemistry supporting environmental processes, and the main reactions of natural & anthropogenic chemicals in the atmosphere, water, and soils. Note: This course may be listed as either BIOL 3245 or CHEM 3245. Credit can not be obtained for both BIOL 3245 and CHEM 3245.

Prerequisite: CHEM 2421.

BIOL3251Introduction to Microbiology 3 ch (3C/WEB)

Introduction to the fundamental concepts of infectious disease microbiology. Discusses bacteria, fungi, viruses, protozoa, helminths and arthropods. For Nursing students only (or with permission of Instructor).

BIOL3275Economic Botany (O)4 ch (3C 3L)

Considers the range of ways in which plants are used by humans for food, medicine, shelter, etc. Discusses the impact of plants on humans and vice versa, including the possible origins and impacts of agriculture, importance of plants in various cultures, and selection of desirable plant features by humans. Students will research an area of particular interest and present a seminar on it.

Prerequisite: BIOL 2125.

BIOL3353Flora of New Brunswick (O)5 ch (3C 3L)

A practical taxonomy course dealing with a range of vascular plants: ferns, fern allies, gymnosperms and flowering plants; consideration of taxonomic concepts, literature and methods used to identify various groups. Laboratory emphasis will be on features of important plant families and identification of students’ plant collections.

Prerequisite: BIOL 2125.

BIOL3362Current Topics in Aquaculture3 ch (3C)

This course will explore topics of special interest to aquaculturists at an advanced level. The title of the topic will be specified by the Department. The title of the topic will appear on the student's transcript. Open only to students in third year and above.

Prerequisite: Permission of the Instructor.

BIOL3363Special Topics in Biology3 ch (3C)

This course will explore topics of special interest at an advanced level. Topics will be specified by the Department. Title of topic will appear on the student transcripts. Open only to students in third year and above. 

Prerequisite: Permission of the Instructor. 

BIOL3364Special Topics in Biology4 ch (3C 3L)

This course will explore topics of special interest at an advanced level. Topics will be specified by the Department. Title of topic will appear on the student transcripts. Open only to students in third year and above. 

Prerequisite: Permission of the Instructor. 

BIOL3385Advanced Microbiology5 ch (3C 3L) (EL)

This course is an in-depth introduction into original research and experiential learning. Students will design and implement a research project involving isolation of microbes, molecular identification of cultures, fermentation and extraction of biologically active compounds. Compounds will be assessed through bioassay-directed fractionation and biological activity determined through quantitative procedures. This course will include: experimental design, acquisition of new laboratory skills, statistical analysis and scientific writing.

Prerequisites: BIOL 2485 and CHEM 2422.
BIOL3435Biomolecules and Primary Metabolism (A) (Cross-Listed: CHEM 3435)3 ch (3C)

This course will examine the chemistry, function, biosynthesis and metabolism of primary metabolites. Classes of compounds covered will include carbohydrates, fatty acids, amino acids, peptides, proteins and nucleic acids. Note: This course may be listed as either BIOL 3435 or CHEM 3435. Credit cannot be obtained for both BIOL 3435 and CHEM 3435.

Prerequisites: CHEM 2422 and BIOL 2065.

BIOL3522Movement Ecology3 ch (3C)
Individuals move for many reasons throughout their life cycle, e.g., to search for a good place to live, to escape predation, to gain access to food, or to find a mate. This course will cover the patterns, causes, and consequences of different types of movement, with an emphasis on dispersal and migration. We will consider questions such as: is selection for movement strategies different across different environments? What role will movement play in an increasingly fragmented and changing world? Reading and discussing primary literature will be a key component of this course.

Prerequisites:
BIOL 2585 and at least one university-level statistics course, or permission from instructor.
BIOL3541Plant Ecology (O)5 ch (3C 3L)

A course on the factors affecting the distribution and abundance of plants, how patterns and structure at the levels of populations and communities can be described quantitatively, and how these arise from the interaction of abiotic (climate, fire, soil) and biotic (competition, herbivory) factors.

Prerequisites: BIOL 2125 and BIOL 2585.

BIOL3553Introduction to Bioinformatics (Cross-listed:CS3553)4 ch (3C)

Even before the completion of the Human Genome Sequencing Project biomedical databases have stored massive amounts of DNA and protein sequence information that have been analysed and reused in biomedical studies. Today the underlying technologies and analytical tools supporting genomic data analysis make up the field known as Bioinformatics. This course will introduce core topics and tools in genomics and bioinformatics explained from a practical perspective. Students taking this course will receive hands-on training in many of the following areas of study: Genome Sequencing techniques, Gene Prediction, Sequence Alignment, Sequence Databases, Genome and Protein Structure Annotation, Bioinformatic Visualization Techniques, Gene Ontology, Analysis of Scientific Literature, Biomedical Text Mining, Workflow Management Systems, Bioinformatics Web Services.

Prerequisite: 60 credit hours completed in a BSc (Biology, Marine Biology, Environmental Biology, or Biology-Psychology) or in a BScCS or permission of the instructor.
BIOL3565Conservation Biology (A)4 ch (2C 3L)

Emphasizes the management of environmental and ecological resources in such a way as to maintain ecosystem resources for the protection of species. Focus will be on methods of determining population habitat requirements, community interactions, impacts of habitat change, cumulative effects of environmental pressures, etc. in coastal systems. Issues such as biodiversity, habitat protection, endangered species protection, politics of conservation, etc. will also be discussed.

Prerequisite: BIOL 2585.

BIOL3608Geographic Information Systems4 ch (1.5C 3L) (EL)

This course introduces GIS (Geographic Information System) with the ArcGIS suite which is the industry standard for mapping and spatial data analysis. Students will use GIS to analyze real publicly available data and generate spatial analyses. Students will learn to communicate results in publication quality maps and graphics. Examples will center around applied ecological management of coastal systems.

BIOL3625Structure and Functions of Marine Invertebrates5 ch (3C 3L)

Explores the structure and functions of major marine invertebrate phyla, emphasizing comparative and organismic approaches, respectively. Topics covered include food capture and digestion, defense mechanisms, respiration, circulation, excretion, skeletal support, reproduction and life cycles, as well as locomotion.

Prerequisite: BIOL 2615.

BIOL3635Animal Physiology II (A)4 ch (2C 4L)

A physiological approach to organismic function in animals, focusing on endocrine and temperature effects on homeostasis; osmoregulation; and the respiratory and urinary systems.

Prerequisite: BIOL 3055.

BIOL3652Sci and Mgmt of Marine Fisheries4 ch (3C 3L*)
This course aims to give students an understanding of the science supporting the management of marine fisheries. Topics include the history of fisheries and fisheries science, ocean production, structure and dynamics of exploited populations, life history analysis, fisheries data and models, stock assessment, environmental and social impacts, and fisheries management. Topics will be covered through lecture, computer-based lab exercises and a critical lecture review exercise.

Prerequisite:
BIOL 2585 and BIOL 2615, or with permission from instructor.
BIOL3655Coastal Ecology and Management4 ch (3C 1.5L) (EL) (W)
Ecology is the interactions of organisms with each other and their environment. Managers at various levels of government must balance diverse stakeholders and interests to serve economic, cultural, and conservation domains. This course will explore coastal ecology, the management of coastal systems and will use case studies from around the world to teach the concepts.

Prerequisite: BIOL 2585
BIOL3665Introduction to Environmental Law (A)3 ch (3C)

This course will provide a general overview of the different concepts that surround environmental law. Recent events have focused our attention on the fragility of the environment, and there is evidence of its deterioration in the forms of harmful pollution, resource depletion, thinning of the earth’s ozone layer, global warming, ground water contamination and the decline or even extinction of species. We will look at the legislation, the common law, and the different remedies they provide in cases of environmental crisis. Credit cannot be obtained for both ENVE 3665 and BIOL 3665.

Prerequisite: A minimum of 60 ch.

BIOL3714Animal Communication (Cross-listed: PSYC 3714)3 ch (3C)
An overview of animal communication and its biological significance, with emphasis on vocal communication. The course will discuss various systems of communication in terms of production, perception, and the conveyance of vital information, with reference and comparison to human communication where applicable. The ways in which communication systems are shaped by - and in some cases contribute to - evolutionary processes will also be discussed.

 
Prerequisites: PSYC 1003 and PSYC 1004, or BIOL 1105 and BIOL 1205.

BIOL3715Biology of Vertebrates5 ch (3C 3L)

A comparative account, principally of the physiology and functional anatomy of the higher vertebrates.

Prerequisite: BIOL 2615.

BIOL3755Fish Biology (A)5 ch (3C 3L)

A study of the anatomy, physiology, and classification of recent fishes. In classification and geographical distribution, emphasis is placed on the marine northwest Atlantic fishes and freshwater fishes of New Brunswick. Limited enrolment: preference will be given to Applied Coastal Ecology Majors and Marine Biology Majors, then other students based on C.G.P.A.

Prerequisite: BIOL 2615

BIOL3776Physiology of Marine Vertebrates (A)4 ch (3C 3L*)
A course about the patterns and processes of physiological adaptation to the marine environment among vertebrates. Emphasis will be placed on diving physiology, respiratory physiology and coping with environmental hypoxia, osmoregulation physiology and coping with excess salt; consequences of heat exchange in cold and hot marine habitats; and the challenges of living in the deep-sea.

Prerequisite:
BIOL 3055.
BIOL3825Applied Field Ecology 5 ch (3C 3L) (EL)
Applied ecology uses fundamental principles of ecological theory to help solve some of the most important environmental problems facing the world today. This course will examine natural processes involved in maintaining ecosystems and how they are applied to solve ecological issues. This course will include an intensive 5-day series of field activities in Fundy National Park, starting the week before the Fall Term. NOTE: Limited enrolment.

Prerequisites: BIOL 2585 and permission from the instructor.
BIOL3853Introduction to Pathophysiology3ch (3C)

This introductory course aims to provide students with a basic understanding of pathophysiology. Topics include the mechanisms of inflammation and cellular injury, and the pathophysiology of the digestive, circulatory, respiratory and endocrine systems. NOTE: Students cannot receive credit for BIOL 3853 and BIOL 2852, or BIOL 3853 and BIOL 2831.

Prerequisites: BIOL 1411 (or BIOL 1441) and BIOL 1412 (or BIOL 1442) with a C or better, or with permission from the instructor. For non-nursing students only.

BIOL3875Tropical Marine Biology5 ch (3C 3L) (EL)

Students will be studying the behaviour and ecology of tropical marine flora and fauna in Bimini, Bahamas. The emphasis will be on marine vertebrate species and their surrounding environment. The impact of tourism on this flora and fauna will also be a focus of this course.

Prerequisites: BIOL 2615 and minimum of 60 ch completed.
BIOL3903Diversity and Habitats of Marine Organisms5 ch (3C 3L)

This course introduces students to the diversity and systematics of marine organisms in the Bay of Fundy, including major taxonomic divisions of mammals, fish, algae, and invertebrates. The course emphasizes variation in assemblages of organisms inhabiting different types of habitats, such as estuaries, marine benthos and pelagos, as well as rocky and soft-sediment intertidal shores. Students will be exposed to this diversity by learning about a number of methods commonly used to sample and quantify the abundance of marine organisms, such as transects and quadrats, mark-recapture experiments, beach seine, minnow traps, dip nets, bottom trawls, gillnets as well as shipboard techniques. Note: This course is offered exclusively in the Marine Semester. 

Prerequisites: At least one university level introductory course in each of ecology and zoology with a grade of “C” or better.

BIOL3913Adaptations of Marine Organisms5 ch (3C 3L)

This course introduces students to a myriad of adaptations of marine organisms living in the Bay of Fundy. Topics covered will vary from year to year. Students will learn about major ecological factors affecting the distribution and abundance of marine organisms, and they will study select biochemical, physiological, morphological, behavioral and life-history adaptations displayed by these organisms in response to these selective agents. Students will also investigate variation of these adaptive traits in relation to temporal and spatial variability in the characteristics of marine habitats. This knowledge will largely be acquired through short-term lab and field observations and exercises, which will be supported by lectures, directed readings and group discussions. Many exercises will rely on the scientific approach to test competing hypotheses pertaining to the functional significance of selected features displayed by marine organisms. NOTE: This course is offered exclusively in the Marine Semester.

Prerequisites: At least one university level introductory courses in each of ecology and zoology with a grade of “C” or better.

BIOL3922History and Development of Aquaculture3 ch (3C)

This course reviews the history and evolution of aquaculture practices. Topics covered will vary from year to year, but may include: seaweed, aquatic plant, invertebrate and fish species being cultivated in the world; site and practice selection and management; different types of aquaculture systems and their sustainability; monoculture; integrated multi-trophic aquaculture; offshore aquaculture; land-based aquaculture; aquaculture and environment impacts: what is acceptable; aquaculture and ecosystem services (nutrient biomitigation, oxygen provision, carbon sequestration, reduction of ocean acidification) ; assimilative capacity and resilience of ecosystems; aquaculture and climate change; aquaculture and harmful algal blooms; veterinarian approach to aquaculture; societal, economic and regulatory aspects of aquaculture; aquaculture in the broader integrated coastal zone management perspective; organism health and healthy products; differentiation and diversification of products; food production systems; world markets and consumer trends; business models and the integrated sequential biorefinery concept; development of responsible aquanomy. Some components of the course will be delivered by experts from Fisheries and Oceans Canada, the Canadian Food Inspection Agency, the New Brunswick Department of Agriculture, Aquaculture and Fisheries, other academic institutions, the aquaculture industry, aquaculture professional associations, feed companies, and consultants. 

Prerequisite: 60 ch completed or permission of instructor. 

BIOL3923History and Development of Marine Aquaculture2 ch (3C)

This course reviews the history and evolution of marine aquaculture practices. Topics covered will vary from year to year, but may include: plant and animal species being cultivated in the world; different types of aquaculture systems and their sustainability; site and practice selection and management; aquaculture and environment impacts: what is acceptable; assimilative capacity and resilience of ecosystems; social, economic and regulatory aspects of aquaculture; aquaculture in broader integrated coastal zone management perspective; integrated multitrophic aquaculture and offshore aquaculture; differentiation and diversification of products, world markets and consumer trends. To connect the theory in the classroom to the experience in the field, visits of hatcheries, aquaculture sites, as well as processing and manufacturing facilities will be conducted. Different components of the course will be delivered by experts from the Department of Fisheries and Oceans, the Canadian Food Inspection Agency, the New Brunswick Department of Agriculture and Aquaculture, aquaculture professional associations, the aquaculture industry, feed companies and consultants. NOTE: This course is offered exclusively in the Marine Semester, and has no prerequisites.

BIOL3933Directed Studies in Marine Sciences5 ch (3C 3L) (EL)

This course teaches students the fundamentals of the scientific method, and gives them the opportunity to conduct a small research project in marine sciences under the supervision and guidance from practicing scientists. Topics covered include: hypotheses and predictions; experimental and comparative approaches; variation, replication, pseudo-replication and sampling; calibration, accuracy and precision; experimental designs and their relation to statistics; scientific writing. Students will first work through a small question with instructors to put into practice concepts discussed in class, and they will then work on their own project throughout the better part of the semester to further hone their research skills. Students will choose the topic of their project and establish its design in consultation with instructors and via group discussions with classmates. Projects will be designed to take advantage of local marine organisms and habitats. Students will collect, analyze, interpret and write-up their results following the format of a scientific paper, and they will present them to the class at the end of the semester. NOTE: This course is offered exclusively in the Marine Semester.

Prerequisites: At least one university level introductory course in each of statistics, ecology and zoology, all with a grade of “C” or better.
BIOL3943Current Topics in Marine Sciences3 ch (3C) (EL)

This is a seminar course to acquaint students with some topical issues and recent developments in marine sciences, and provide them with an opportunity to critically evaluate and discuss scientific work. The course will consist of research seminars given by university and government scientists, as well as assigned readings and group discussions that will be associated with each presentation. Topics and guest speakers will vary from year to year, but all seminars will be based on marine organisms, habitats, and/or topical issues, both theoretical and practical. NOTE: This course is offered exclusively in the Marine Semester.

Prerequisites: At least one university level introductory course in each of statistics, ecology and zoology, all with a grade of “C” or better.
BIOL3953Functional Ecology of Coastal Fishes4 ch (1C 3L) (EL)

This course is a field‐based investigation into the diversity, ecology, and physiology of fishes living in coastal habitats of Atlantic Canada. The major theme is how habitat‐specific abiotic and biotic environmental factors shape the function and ecology of fishes. Using a hypothesis‐driven approach, emphasis will be placed on the fundamental tasks of acquiring and expending energy to survive and reproduce, as well as the profound influence of temperature on organismal performance. The course involves field and lab exercises, with supplementary lectures. Students will gain experience with techniques for sampling wild fishes, experimental approaches to study the functional ecology of fishes, and identification and quantification of fish assemblages in subtidal, intertidal, and estuarine habitats in the Bay of Fundy region. NOTE: This course is offered exclusively in the Marine Semester.

Prerequisites: At least one university level introductory course in each of ecology and zoology with a grade of “C” or better.
BIOL3955Biological Oceanography (A)4 ch (3C 3L*)

This course introduces students to a sub-discipline of oceanography that emphasizes the relationships between marine biological and ocean environmental systems. The course will introduce the ecology of planktonic organisms responsible for global ocean carbon cycling, and explain the major dynamical relationships among plankton ecology, population biology and the ocean environment (e.g., critical depth theory, biological pump theory). Applied mathematics is emphasized in these discussions and in the class and lab assignments. In the computer laboratories, students will learn the fundamentals of ocean ecosystem modeling in the R computer language. 

Prerequisite: BIOL 1202 and at least one university level introductory course in calculus (MATH 1001, MATH 1003 or equivalent) with a grade of C+ or better.

BIOL3963Intertidal Ecology4 ch (3C 3L) (EL)
This course introduces students to intertidal ecology. Topics covered will vary from year to year, but may include the origin, evolution, and diversity of seaweeds and intertidal invertebrates and their significant roles and services in coastal ecosystems. Students will learn through short-term lab and field observations and exercises, which will be supported by lectures, directed readings, and group discussions. NOTE: This course is offered exclusively in the Marine Semester.

Prerequisites: At least one university level introductory course in each of ecology and zoology with a grade of "C" or better.
BIOL3973Foraging Ecology4 ch (3C 3L) (EL)
This course introduces students to the discipline of foraging ecology in the ocean. Topics covered may include predator-prey relationships, ocean productivity dynamics, top predator (mammal, bird and shark) foraging ecology, and marine feeding habitats. Students will participate in lab and field observations and exercises, lectures, readings, and group discussions. NOTE: This course is offered exclusively in the Marine Semester.

Prerequisites: At least one university level introductory course in each of ecology and zoology with a grade of "C" or better.
BIOL4090Honours Project9 ch (EL) (W)

Gives academically strong Biology, Biology-Psychology, Environmental Biology, and Marine Biology Majors, under the supervision of a full time faculty member, an opportunity to undertake a thesis project with permission of the Department. Students who intend to apply for this course are advised to consult with their intended supervisory faculty member at the beginning of their third year.

BIOL4155Current Topics in Biology3 ch (2C)

A lecture/seminar course to acquaint students with some of the outstanding recent developments in various fields. Restricted to students majoring in Biology or Marine Biology. 

Prerequisite: Permission of Instructor.

BIOL4178Applied Ecology Skills and Techniques5 ch (3C 3L) (W)
Students will complete five Applied Coastal Ecology skills modules. The course will address critical skills and concepts including sampling design, monitoring techniques, field sampling techniques, data management, coding, and advanced statistical techniques. 

Prerequisite: BIOL 2585
BIOL4245Molecular Ecology 4 ch (3C 3L*)

Molecular Biology plays an important role in ecology. This course will introduce concepts and applications in molecular evolution, population genetics, quantitative genetics and ecological genomics. Topics will include gene expression, genomics, proteomics and bioinformatics. Students will become familiar with various molecular methodologies, data analysis, and result interpretation that can be used to study ecology, adaptation, and contemporary evolution. This course will appeal to those students interested in the natural sciences, as well as the medical sciences. 

Prerequisite: BIOL 2015 or BIOL 2245 or BIOL 3022 or permission of the Instructor. 

BIOL4325Biology of Marine Birds4 ch (3C 3L*)

The biology of seaducks, seabirds, and shorebirds. This course will cover aspects of life history, anatomy, physiology, behavior, and conservation of marine birds with an emphasis placed on North Atlantic species.

Prerequisite: BIOL 2585, BIOL 2615.
BIOL4373Tropical Marine Biology Field Courses3 ch

An examination of tropical coastal ecosystems. The course will focus on the ecology of coral reefs, tropical fish ecology and physiology, tropical seaweed biology and mangrove ecology. The course consists of lectures, fieldwork and laboratory work.

Prerequisite: Permission of the instructor. 

BIOL4385Pharmacognosy and Natural Products Research 5 ch (3C 3L) (EL)

Pharmacognosy is the study of medicines derived from natural sources and BIOL 4385 will expose students to the strategies and techniques employed in the natural product drug discovery process. This course follows BIOL 3385 Advanced Microbiology, where students continue to experience isolation of microbes from plant and animal host tissues and determine the potential existence of bioactive natural products. Techniques include: aseptic technique, microbial culture maintenance and storage, fermentation, liquid-liquid partition, bioassay-directed fractionation, NMR and PCR determination of chemical structures and microbial identity respectively.

Prerequisite: BIOL 3385 or instructor's permission
BIOL4435Biologically Active Natural Products and Secondary Metabolism (A) (Cross-Listed: CHEM 4435) 3 ch (3C)

This course will examine the biosynthesis, biological activity and ecological significance of secondary metabolites. The following topics will include: the links between primary and secondary metabolic pathways; an overview of the mechanisms, chemistry and coenzymes involved in the biosynthesis of natural products; the acetate pathway; the Shikimate pathway; the mevalonate and methyl erythritol phosphate pathways; the alkaloids and chemical ecology. Note: This course may be listed as either BIOL 4435 or CHEM 4435. Credit cannot be obtained for both BIOL 4435 and CHEM 4435.

Prerequisites: CHEM 2422 and BIOL 2065.

BIOL4445Marine Behavioral Ecology3 ch (3C)

Explores the relationship between animal behaviour, ecology and evolution. Theoretical concepts covered include the economics of animal decision making, predator-prey relationships, competition, fighting and assessment, sexual conflict and sexual selection, parental care and mating systems, alternative breeding strategies, altruism and co-operation. Whenever possible marine organisms, and particularly invertebrates, will be used to illustrate theoretical concepts.

Prerequisite: BIOL 2585 Introductory Ecology.

BIOL4645Biology and Conservation of Marine Mammals (A)3 ch (3C) (W)

The biology of seals, whales, and sea-cows. Life histories, behaviour, reproduction, and population estimation techniques will receive special emphasis. The biological, economic, and moral aspects of man’s direct and indirect influence on, and utilization of marine mammals will be discussed.

Prerequisite: BIOL 2615.

BIOL4663Advanced Elasmobranch Studies3 ch (3C)

This course will introduce students to advanced studies in elasmobranch biology and ecology with an emphasis on sharks, in particular sharks of the Northern Hemisphere. Topics will include current techniques in shark research, global conservation measures, Canadian Shark Management Plans, shark diving industry, shark fishing, and in-depth studies on shark physiology. 

PrerequisitesBIOL 2615 and BIOL 3055 (or permission of instructor).
BIOL4693Diversity and Systematics of Marine Invertebrates4 ch (3C 3L)

Introduces basic techniques for invertebrate identification, monitoring and biodiversity assessment in rich and diverse invertebrate fauna of the Quoddy Region. Practical work includes shipboard sampling, field trips to coastal sites and laboratory exercises that present a broad overview of invertebrates of intertidal, plankton and subtidal benthic communities. The course is held at the Huntsman Marine Science Centre, St. Andrews, and is twelve days in length. A charge of tuition, full board and lodging is required. 

Prerequisite: BIOL 2615 or equivalent.

BIOL4825Introduction to Ecotoxicology (A)4 ch (2C 3L*)

A theoretical and applied approach to the science of ecotoxicology, including application of the tools and procedures used to understand toxicant fate and effects in ecosystems. Both field (e.g. Community level environmental “effects” monitoring) and laboratory (e.g. LC50 tests) methods for understanding contaminant fates and effects will be examined.

Prerequisite: At least 20 ch of Biology courses completed.

BIOL4855Biometrics4 ch (3C 2T) (EL)

Students are introduced to methods of statistical analysis relevant to biological questions. Topics of study will include: experimental design, how to deal with noisy data (transformations); parametric and non-parametric tests; how to deal with missing data; regression (linear & non linear); statistical packages; and introduction to multivariate statistics (PCA and DFA).

Prerequisite: STAT 2263 or equivalent.

BIOL4861Advanced Environmental Biology (A)4 ch (3C 3L*)

This course examines several of the main environmental issues of concern in the region, in Canada and around the globe such as impacts of natural resource development (e.g., oil and gas, forestry, mining), climate change, and water use and its pollution on the environment and on humans. It covers emerging options with green energy and sustainable development, and provides students with an in-depth understanding of the links between human activities and environmental health.

Prerequisite: BIOL 1302.
BIOL4875Environmental Techniques (A)4 ch (3C 3L*)

A techniques course, in which students will have practical experience in sampling and analytical techniques, including: water, air and soil sampling; plant and animal sampling in field and lab; and chemical analyses of tissues and water, air and soil. Appropriate study design and statistical analyses of collected data will be emphasized.

BIOL4935Comparative Animal Behaviour3 ch (3C) (W)

Physiological bases of behaviour, the animal in relation to its environment, the animal in its social context, and the evolution of behavioural displays and activities. Emphasizes the adaptive significance of behavioural activities (ethology) rather than experimental psychology.

Prerequisite: BIOL 2615.

BIOL4955Data Science and Programming3 ch (1C 2L)
This course will teach programming in the Python and/or R languages. The course will also use BASH scripting to interact with and manipulate files and use remote servers. The course will prepare students for "big data" ecological modelling. 

Prerequisite: CS 1003 or an appropriate introductory programming course approved by the instructor. 
BIOL4985Coastal Ecological Modelling4 ch (2C 3L)
This course teaches ecological modelling in a coastal setting. Students will use the Python and R languages as well as GIS to model populations of organisms in response to fishing, development, climate change, and natural variability. 

Prerequisite: BIOL 3655
BIOL4995Capstone Project5 ch (3C 3L) (W) (EL)
This course will teach the students to work as a team to create a coastal management plan. Students will be arranged in small teams with complementary skill sets and interests. Students will create a multi-year management plan for a coastal ecosystem (e.g. Bay of Fundy). Preparing the management plan will require students to understand concepts from multiple disciplines including ecological modelling, economics, social science, and environmental law. Various stakeholders will be invited to present lectures. The completed management plan will be presented orally for the final exam. NOTE: This course is only open to students in the Applied Coastal Ecology major.

Prerequisites: A minimum of 90 ch and permission of the instructor.